Serological and genetic characterization of Flavobacterium psychrophilum isolated from farmed salmonids in Turkey

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dc.contributor.authorSatıcıoğlu, İzzet Burçin
dc.contributor.authorWiklund, Tom
dc.contributor.buuauthorDuman, Muhammed
dc.contributor.buuauthorAltun, Soner
dc.contributor.departmentUludağ Üniversitesi/Veterinerlik Fakültesi/Su Hayvanları Hastalıkları Bölümü.tr_TR
dc.contributor.orcid0000-0001-7707-2705tr_TR
dc.contributor.orcid0000-0001-9096-875Xtr_TR
dc.contributor.researcheridT-1697-2019tr_TR
dc.contributor.researcheridAAG-8518-2021tr_TR
dc.contributor.scopusid55568071100tr_TR
dc.contributor.scopusid56269221600tr_TR
dc.date.accessioned2024-01-30T11:27:57Z
dc.date.available2024-01-30T11:27:57Z
dc.date.issued2018-11
dc.description.abstractTurkey was the largest rainbow trout producer of the European countries in 2016, and the reason for this production is mainly attributed to its egg and fry production. Flavobacterium psychrophilum cause the highest rates of mortality in the starting to feeding stages of the fish. In the present study, twenty-five F. psychrophilum isolates recovered from rainbow trout, coruh trout and brook trout were analysed by RAPD-PCR, ERIC-PCR, REP-PCR and PCR-RFLP, including 16S rRNA, gyrA and gyrB gene regions and PCR-based serotyping method. The PCR-based molecular analysis showed that the isolates could not be differentiated exactly according to isolation source and geographical region. Most isolates were of type-1 and type-2, and some of them were of type-0 and type-3; in addition, one isolate showed a unique serotype. The combined analysis results showed that F. psychrophilum isolates discriminated as five different genotypes and all isolates were successfully discriminated based on host.en_US
dc.identifier.citationSatıcıoğlu, İ. B. vd. (2018). ''Serological and genetic characterization of Flavobacterium psychrophilum isolated from farmed salmonids in Turkey''. Journal of Fish Diseases, 41(12), 1899-1908.en_US
dc.identifier.doihttps://doi.org/10.1111/jfd.12901
dc.identifier.endpage1908tr_TR
dc.identifier.issn0140-7775
dc.identifier.issn1365-2761
dc.identifier.issue12tr_TR
dc.identifier.pubmed30294785tr_TR
dc.identifier.scopus2-s2.0-85054489668tr_TR
dc.identifier.startpage1899tr_TR
dc.identifier.urihttps://onlinelibrary.wiley.com/doi/10.1111/jfd.12901
dc.identifier.urihttps://hdl.handle.net/11452/39394
dc.identifier.volume41tr_TR
dc.identifier.wos000449651200012tr_TR
dc.indexed.pubmedPubMeden_US
dc.indexed.scopusScopusen_US
dc.indexed.wosSCIEen_US
dc.language.isoenen_US
dc.publisherWileyen_US
dc.relation.collaborationYurt içi
dc.relation.collaborationYurt dışı
dc.relation.journalJournal of Fish Diseasesen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergitr_TR
dc.relation.tubitak116O626
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectFisheriesen_US
dc.subjectMarine & freshwater biologyen_US
dc.subjectVeterinary sciencesen_US
dc.subjectF. psychrophilumen_US
dc.subjectMolecular serotypingen_US
dc.subjectPCR-RFLPen_US
dc.subjectRAPD-PCRen_US
dc.subjectRainbrow-trout fryen_US
dc.subjectBacterial coldwater diseaseen_US
dc.subjectOncorhynchus-mykissen_US
dc.subjectFishen_US
dc.subjectResistanceen_US
dc.subjectDiversityen_US
dc.subject.emtreeBacterial RNAen_US
dc.subject.emtreeDNA topoisomerase (ATP hydrolysing)en_US
dc.subject.emtreeRNA 16Sen_US
dc.subject.emtreeArticleen_US
dc.subject.emtreeBacterium isolateen_US
dc.subject.emtreeControlled studyen_US
dc.subject.emtreeEpidemicen_US
dc.subject.emtreeFlavobacteriumen_US
dc.subject.emtreeFlavobacterium psychrophilumen_US
dc.subject.emtreeGene amplificationen_US
dc.subject.emtreeMultiplex polymerase chain reactionen_US
dc.subject.emtreeNonhumanen_US
dc.subject.emtreeOncorhynchus kisutchen_US
dc.subject.emtreeOncorhynchus mykissen_US
dc.subject.emtreePolymerase chain reactionen_US
dc.subject.emtreeRestriction fragment length polymorphismen_US
dc.subject.emtreeSalmoniden_US
dc.subject.emtreeSalmonineen_US
dc.subject.emtreeSalvelinus fontinalisen_US
dc.subject.emtreeSerologyen_US
dc.subject.emtreeSerotypingen_US
dc.subject.emtreeAnimalen_US
dc.subject.emtreeClassificationen_US
dc.subject.emtreeFish diseaseen_US
dc.subject.emtreeFisheryen_US
dc.subject.emtreeFlavobacteriaceae infectionen_US
dc.subject.emtreeFlavobacteriumen_US
dc.subject.emtreeGeneticsen_US
dc.subject.emtreeMicrobiologyen_US
dc.subject.emtreePhysiologyen_US
dc.subject.emtreeSalmonineen_US
dc.subject.emtreeTurkey (bird)en_US
dc.subject.emtreeVeterinary medicineen_US
dc.subject.meshAnimalsen_US
dc.subject.meshDNA gyraseen_US
dc.subject.meshFish diseasesen_US
dc.subject.meshFisheriesen_US
dc.subject.meshFlavobacteriaceae infectionsen_US
dc.subject.meshFlavobacteriumen_US
dc.subject.meshOncorhynchus mykissen_US
dc.subject.meshPolymerase chain reactionen_US
dc.subject.meshPolymorphism, restriction fragment lengthen_US
dc.subject.meshRNA, bacterialen_US
dc.subject.meshRNA, ribosomal, 16sen_US
dc.subject.meshSerotypingen_US
dc.subject.meshTrouten_US
dc.subject.meshTurkeyen_US
dc.subject.scopusFlavobacterium Psychrophilum; Menaquinone 6; Phylogenyen_US
dc.subject.wosFisheriesen_US
dc.subject.wosMarine & freshwater biologyen_US
dc.subject.wosVeterinary sciencesen_US
dc.titleSerological and genetic characterization of Flavobacterium psychrophilum isolated from farmed salmonids in Turkeyen_US
dc.typeArticleen_US
dc.wos.quartileQ2en_US
dc.wos.quartileQ2en_US

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