Publication: Helicobacter turcicus sp. nov., a catalase- negative new member of the helicobacter genus, isolated from anatolian ground squirrel (spermophilus xanthoprymnus) in Turkey
dc.contributor.author | Aydın, Fuat | |
dc.contributor.author | Karakaya, Emre | |
dc.contributor.author | Kayman, Tuba | |
dc.contributor.author | Abay, Seçil | |
dc.contributor.buuauthor | Satıcıoğlu, İzzet Burçin | |
dc.contributor.buuauthor | SATICIOĞLU, İZZET BURÇİN | |
dc.contributor.department | Bursa Uludağ Üniversitesi/Keleş Meslek Yüksekokulu. | |
dc.contributor.orcid | 0000-0002-2721-3204 | |
dc.contributor.researcherid | AAD-4156-2019 | |
dc.date.accessioned | 2024-10-18T05:45:23Z | |
dc.date.available | 2024-10-18T05:45:23Z | |
dc.date.issued | 2022-01-01 | |
dc.description.abstract | Eleven Gram-negative, curved and S-shaped, oxidase activity positive, catalase activity negative bacterial isolates recovered from faeces of Anatolian ground squirrel (Spermophilus xanthoprymnus) in the city of Kayseri, Turkey, were subjected to a polyphasic taxonomic study. Results of a genus-specific PCR revealed that these isolates belonged to the genus Helicobacter. The 16S rRNA gene sequence analysis revealed that the 11 isolates had over 99 % sequence identity with each other and were most closely related to Helicobacter ganmani CMRI H02(T) with 97.0-97.1 % identity levels and they formed a novel phylogenetic line within the genus Helicobacter. Faydin-H64 and Faydin-H70(T) strains were subjected to gyrA and atpA gene and whole genome sequence analyses. These two Helicobacter strains formed separate phylogenetic clades, divergent from other known Helicobacter species. The DNA G+C content and genome size of the strain Faydin-H70(T) were 35.3 mol% and 1.7 Mb, respectively. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain Faydin-H70(T) and its close phylogenetic neighbour H. winghamensis ATCC BAA-430(T) were determined as 81.7 and 34.9%, respectively. Pairwise sequence comparison showed that it was closely related to H. ganmani CMRI H02(T) however it shared the highest ANI and dDDH values with H. winghamensis ATCC BAA-430(T). The data obtained from the polyphasic taxonomy approach, including phenotypic characterization and whole-genome sequences, revealed that these strains represent a novel species within the genus Helicobacter, for which the name Helicobacter turcicus sp. nov., is proposed with Faydin-H70T as the type strain (=DSM 112556(T)=LMG 32335(T)). | |
dc.identifier.doi | 10.1099/ijsem.0.005338 | |
dc.identifier.issn | 1466-5026 | |
dc.identifier.issue | 5 | |
dc.identifier.uri | https://doi.org/10.1099/ijsem.0.005338 | |
dc.identifier.uri | https://hdl.handle.net/11452/46701 | |
dc.identifier.volume | 72 | |
dc.identifier.wos | 000808342600010 | |
dc.indexed.wos | WOS.SCI | |
dc.language.iso | en | |
dc.publisher | Microbiology Soc | |
dc.relation.journal | International Journal Of Systematic And Evolutionary Microbiology | |
dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi | |
dc.rights | info:eu-repo/semantics/closedAccess | |
dc.subject | Gastric helicobacters | |
dc.subject | Minimal standards | |
dc.subject | Campylobacter | |
dc.subject | Identification | |
dc.subject | Pullorum | |
dc.subject | Sequences | |
dc.subject | Animals | |
dc.subject | Pylori | |
dc.subject | Tests | |
dc.subject | Trees | |
dc.subject | Anatolian ground squirrel | |
dc.subject | Helicobacter | |
dc.subject | Feces | |
dc.subject | Novel species | |
dc.subject | Overall genome-related index | |
dc.subject | Science & technology | |
dc.subject | Life sciences & biomedicine | |
dc.subject | Microbiology | |
dc.title | Helicobacter turcicus sp. nov., a catalase- negative new member of the helicobacter genus, isolated from anatolian ground squirrel (spermophilus xanthoprymnus) in Turkey | |
dc.type | Article | |
dspace.entity.type | Publication | |
relation.isAuthorOfPublication | 039c73a6-fd48-4fbe-bd26-0fe99b40120f | |
relation.isAuthorOfPublication.latestForDiscovery | 039c73a6-fd48-4fbe-bd26-0fe99b40120f |