Publication:
Changing epidemiology of influenza and other respiratory viruses in the first year of COVID-19 pandemic

dc.contributor.buuauthorAğca, Harun
dc.contributor.buuauthorAkalın, Halis
dc.contributor.buuauthorSağlık, İmran
dc.contributor.buuauthorHacımustafaoğlu, Mustafa
dc.contributor.buuauthorÇelebi, Solmaz
dc.contributor.buuauthorEner, Beyza
dc.contributor.departmentTıp Fakültesi
dc.contributor.departmentTıp Fakültesi
dc.contributor.departmentTıp Fakültesi
dc.contributor.departmentTıp Fakültesi
dc.contributor.departmentTıp Fakültesi
dc.contributor.departmentTıp Fakültesi
dc.contributor.departmentTemel Tıp Bilimleri
dc.contributor.departmentDahili Tıp Bilimleri
dc.contributor.departmentTemel Tıp Bilimleri
dc.contributor.departmentTemel Tıp Bilimleri
dc.contributor.departmentDahili Tıp Bilimleri
dc.contributor.departmentDahili Tıp Bilimleri
dc.contributor.departmentÇocuk Sağlığı Ve Hastalıkları Ana Bilim Dalı
dc.contributor.departmentEnfeksiyon Hastalıkları Ve Klinik Mikrobiyoloji Ana Bilim Dalı
dc.contributor.departmentTıbbi Mikrobiyoloji
dc.contributor.departmentTıbbi Mikrobiyoloji Ana Bilim Dalı
dc.contributor.departmentTıbbi Mikrobiyoloji Ana Bilim Dalı
dc.contributor.departmentÇocuk Sağlığı Ve Hastalıkları Ana Bilim Dalı
dc.contributor.orcid0000-0002-2651-2034
dc.contributor.orcid0000-0002-4803-8206
dc.contributor.researcheridAAH-4027-2021
dc.contributor.researcheridAAU-8952-2020
dc.contributor.researcheridGCM-3391-2022
dc.contributor.researcheridCTG-5805-2022
dc.contributor.researcheridENK-4130-2022
dc.contributor.researcheridAAG-8523-2021
dc.contributor.scopusid15759379900
dc.contributor.scopusid57207553671
dc.contributor.scopusid35732173500
dc.contributor.scopusid6602154166
dc.contributor.scopusid7006095295
dc.contributor.scopusid15053025300
dc.date.accessioned2024-01-18T05:47:18Z
dc.date.available2024-01-18T05:47:18Z
dc.date.issued2021-09
dc.description.abstractIntroduction: We aimed to determine the epidemiological change in influenza and other respiratory tract viruses isolated from patients with nasopharyngeal swab samples in our hospital during the COVID-19 period. Methods: We investigated nasopharyngeal swabs for respiratory viruses between March 2020 and February 2021 during the first year of pandemic in Turkey. We used QIAStat Dx Respiratory panel (Qiagen, Germany) in QIAStat Dx (Qiagen, Germany) for detection of respiratory viruses between March 2020 and February 2021. Respiratory panel kit included influenza A, B, influenza A H1N1, rhinovirus/enterovirus, parainfluenza (PIV) 1,2,3,4, coronaviruses (CoVs) NL 63, 229E, OC43 and HKU1, human metapneumovirus (MPV) A/B, bocavirus, respiratory syncytial virus (RSV) A/B and adenovirus. Results: We retrospectively analyzed the results of 319 nasopharyngeal swab samples. The average age of 199 (62.4%) male and 120 (37.6%) female patients between the ages of 0-92 was 16 years. We found that 101 (31.7%) samples were positive for viruses. Rhino/enteroviruses were the most common viruses in all age groups. Influenza positivity rate during the first year of pandemic declined to 2.3% from 17.3% among the previous year. MPV infection activity did not change during the pandemic. Discussion: According to our findings we argue that epidemiology of respiratory viruses has changed during the pandemic period. Despite the current clinical focus on the COVID-19 pandemic, clinicians should keep in mind that rhino/enterovirus and MPV infections may mimic COVID-19 and respiratory infections should be differentially diagnosed with rapid multiplex kits containing SARS-CoV-2, rhino/enterovirus and MPV. (c) 2021 The Authors. Published by Elsevier Ltd on behalf of King Saud Bin Abdulaziz University for Health Sciences. This is an open access article under the CC BY license (http://creativecommons.org/ licenses/by/4.0/).
dc.identifier.citationAğca, H. (2021). "Changing epidemiology of influenza and other respiratory viruses in the first year of COVID-19 pandemic". Journal of Infection and Public Health, 14(9), 1186-1190.
dc.identifier.doihttps://doi.org/10.1016/j.jiph.2021.08.004
dc.identifier.endpage1190
dc.identifier.issn1876-0341
dc.identifier.issn1876-035X
dc.identifier.issue9
dc.identifier.pubmed34399190
dc.identifier.scopus2-s2.0-85112475223
dc.identifier.startpage1186
dc.identifier.urihttps://www.sciencedirect.com/science/article/pii/S1876034121002227
dc.identifier.urihttps://hdl.handle.net/11452/39123
dc.identifier.volume14
dc.identifier.wos000700595800012
dc.indexed.scopusScopus
dc.indexed.wosSCIE
dc.language.isoen
dc.publisherElsevier Science London
dc.relation.journalJournal of Infection and Public Health
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectSARS-CoV
dc.subjectInfluenza
dc.subjectPandemic
dc.subjectRhinovirus
dc.subjectCoronaviruses
dc.subjectInfections
dc.subjectFailure
dc.subject.emtreeAdenoviridae
dc.subject.emtreeAdolescent
dc.subject.emtreeAdult
dc.subject.emtreeAged
dc.subject.emtreeArticle
dc.subject.emtreeBocaparvovirus
dc.subject.emtreeChild
dc.subject.emtreeControlled study
dc.subject.emtreeCoronavirus disease 2019
dc.subject.emtreeDiagnostic test accuracy study
dc.subject.emtreeEnterovirus
dc.subject.emtreeEpidemiological data
dc.subject.emtreeFemale
dc.subject.emtreeGroups by age
dc.subject.emtreeHuman
dc.subject.emtreeHuman coronavirus 229E
dc.subject.emtreeHuman coronavirus HKU1
dc.subject.emtreeHuman coronavirus NL63
dc.subject.emtreeHuman coronavirus OC43
dc.subject.emtreeHuman metapneumovirus
dc.subject.emtreeHuman metapneumovirus A
dc.subject.emtreeHuman metapneumovirus B
dc.subject.emtreeHuman respiratory syncytial virus
dc.subject.emtreeHuman respiratory syncytial virus A
dc.subject.emtreeHuman respiratory syncytial virus B
dc.subject.emtreeInfant
dc.subject.emtreeInfluenza A virus
dc.subject.emtreeInfluenza A virus (H1N1)
dc.subject.emtreeInfluenza B virus
dc.subject.emtreeInfluenza virus
dc.subject.emtreeMajor clinical study
dc.subject.emtreeMale
dc.subject.emtreeNasopharyngeal swab
dc.subject.emtreeNewborn
dc.subject.emtreeNonhuman
dc.subject.emtreePandemic
dc.subject.emtreeParamyxovirinae
dc.subject.emtreeReal time polymerase chain reaction
dc.subject.emtreeRespiratory virus
dc.subject.emtreeRetrospective study
dc.subject.emtreeRhinovirus
dc.subject.emtreeSeasonal variation
dc.subject.emtreeSensitivity and specificity
dc.subject.emtreeViral respiratory tract infection
dc.subject.emtreeVirus diagnosis
dc.subject.emtreeVirus isolation
dc.subject.emtreeInfluenza
dc.subject.emtreeMiddle aged
dc.subject.emtreePandemic
dc.subject.emtreePreschool child
dc.subject.emtreeRespiratory tract infection
dc.subject.emtreeVery elderly
dc.subject.emtreeVirus
dc.subject.emtreeYoung adult
dc.subject.meshAdolescent
dc.subject.meshAdult
dc.subject.meshAged
dc.subject.meshAged, 80 and over
dc.subject.meshChild
dc.subject.meshChild, preschool
dc.subject.meshCOVID-19
dc.subject.meshFemale
dc.subject.meshHumans
dc.subject.meshInfant
dc.subject.meshInfant, newborn
dc.subject.meshInfluenza A virus, H1N1 subtype
dc.subject.meshInfluenza, human
dc.subject.meshMale
dc.subject.meshMiddle aged
dc.subject.meshPandemics
dc.subject.meshRespiratory tract infections
dc.subject.meshRetrospective studies
dc.subject.meshSARS-CoV-2
dc.subject.meshViruses
dc.subject.meshYoung adult
dc.subject.scopusAvian Metapneumovirus; Respiratory Virus; Human Respiratory Syncytial Virus
dc.subject.wosPublic, Environmental & Occupational Health
dc.subject.wosInfectious Diseases
dc.titleChanging epidemiology of influenza and other respiratory viruses in the first year of COVID-19 pandemic
dc.typeArticle
dc.wos.quartileQ1
dc.wos.quartileQ1
dspace.entity.typePublication
local.contributor.departmentTıp Fakültesi/Temel Tıp Bilimleri/Tıbbi Mikrobiyoloji
local.contributor.departmentTıp Fakültesi/Dahili Tıp Bilimleri/Enfeksiyon Hastalıkları Ve Klinik Mikrobiyoloji Ana Bilim Dalı
local.contributor.departmentTıp Fakültesi/Temel Tıp Bilimleri/Tıbbi Mikrobiyoloji Ana Bilim Dalı
local.contributor.departmentTıp Fakültesi/Dahili Tıp Bilimleri/Çocuk Sağlığı Ve Hastalıkları Ana Bilim Dalı
local.contributor.departmentTıp Fakültesi/Dahili Tıp Bilimleri/Çocuk Sağlığı Ve Hastalıkları Ana Bilim Dalı
local.contributor.departmentTıp Fakültesi/Temel Tıp Bilimleri/Tıbbi Mikrobiyoloji Ana Bilim Dalı
local.indexed.atPubMed
local.indexed.atWOS
local.indexed.atScopus

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