Publication:
Flavobacterium turcicum sp. nov. and Flavobacterium kayseriense sp. nov. isolated from farmed rainbow trout in Turkey

dc.contributor.authorSatıcıoğlu, İzzet Burçin
dc.contributor.authorAy, Hilal
dc.contributor.authorAltun, Soner
dc.contributor.authorDuman, Muhammed
dc.contributor.authorŞahin, Nevzat
dc.contributor.buuauthorALTUN, SONER
dc.contributor.buuauthorDUMAN, MUHAMMED
dc.contributor.departmentBursa Uludağ Üniversitesi/Veteriner Fakültesi/Su Ürünleri Hastalıkları Anabilim Dalı
dc.contributor.orcid0000-0001-9096-875X
dc.contributor.orcid0000-0001-7707-2705
dc.contributor.researcheridAAG-8518-2021
dc.contributor.researcheridT-1697-2019
dc.date.accessioned2024-06-13T06:02:01Z
dc.date.available2024-06-13T06:02:01Z
dc.date.issued2021-02
dc.description.abstractDuring a study on culturable microorganisms from fish farms, four yellow-pigmented gram negative, rod shaped isolates, F-47(T), F-339(T), F-380 and F-400, were recovered from rainbow trout samples exhibiting clinical signs. Based on 16S rRNA gene sequence analysis, the strains were identified as members of the genus Flavobacterium. Strains F-47(T) and F-380 shared the highest 16S rRNA gene sequence identity level of 97.6% with the type strain of Flavobacterium frigoris DSM 15719(T) while strains F-339(T) and F-400 shared the highest identity level of 97.6% with the type strain of F. caseinilyticum AT-3-2(T). A polyphasic taxonomic approach including phenotypic and genomic characterization as well as whole-cell MALDI-TOF mass spectrometry analyses was employed to ascertain the taxonomic position of the strains within the genus Flavobacterium. Digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) analyses between strains F-47(T), F-339(T) and their close neighbours F. frigoris DSM 15719(T) and F. caseinilyticum AT-3-2(T), respectively, confirmed that both strains represent novel species in the genus Flavobacterium. The DNA G+C contents of the strains F-47(T) and F-339(T) are 34.3% and 35.3%, respectively. It can be concluded on the basis of polyphasic characterization as well as pairwise genome comparisons that the strains F-47(T) and F-339(T) represent two novel species within the genus Flavobacterium, for which Flavobacterium kayseriense sp. nov. F-47(T) (=JCM 34195(T)=KCTC 82255(T)) and Flavobacterium turcicum sp. nov. F-339(T) (=JCM 34202(T)=KCTC 82262(T)) are proposed, respectively.
dc.description.sponsorshipResearch Fund of Erciyes University, Turkey (TSA-2020-9733)
dc.identifier.doi10.1016/j.syapm.2021.126186
dc.identifier.issn0723-2020
dc.identifier.issn1618-0984
dc.identifier.issue2
dc.identifier.pubmed33647765
dc.identifier.urihttps://doi.org/10.1016/j.syapm.2021.126186
dc.identifier.urihttps://www.sciencedirect.com/science/article/pii/S0723202021000096
dc.identifier.urihttps://hdl.handle.net/11452/42105
dc.identifier.volume44
dc.identifier.wos000740924400005
dc.indexed.pubmedPubMed
dc.indexed.wosWOS.SCI
dc.language.isoen
dc.publisherElsevier
dc.relation.journalSystematic and Applied Microbiology
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectProposed minimal standards
dc.subjectEmended description
dc.subjectGenus flavobacterium
dc.subjectPhylogenetic trees
dc.subjectDiversity
dc.subjectSequences
dc.subjectDatabase
dc.subjectFamily
dc.subjectWater
dc.subjectFlavobacterium
dc.subjectRainbow trout
dc.subjectOncorhynchus mykiss
dc.subjectAquaculture
dc.subjectScience & technology
dc.subjectLife sciences & biomedicine
dc.subjectMicrobiology
dc.subjectBiotechnology & applied microbiology
dc.titleFlavobacterium turcicum sp. nov. and Flavobacterium kayseriense sp. nov. isolated from farmed rainbow trout in Turkey
dc.typeArticle
dspace.entity.typePublication
relation.isAuthorOfPublication587c39ff-99c9-4b57-9514-4a94d8b8a38a
relation.isAuthorOfPublication498506bf-cb51-45f4-bef0-287c91cd76bd
relation.isAuthorOfPublication.latestForDiscovery587c39ff-99c9-4b57-9514-4a94d8b8a38a

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