Publication: Flavobacterium turcicum sp. nov. and Flavobacterium kayseriense sp. nov. isolated from farmed rainbow trout in Turkey
dc.contributor.author | Satıcıoğlu, İzzet Burçin | |
dc.contributor.author | Ay, Hilal | |
dc.contributor.author | Altun, Soner | |
dc.contributor.author | Duman, Muhammed | |
dc.contributor.author | Şahin, Nevzat | |
dc.contributor.buuauthor | ALTUN, SONER | |
dc.contributor.buuauthor | DUMAN, MUHAMMED | |
dc.contributor.department | Bursa Uludağ Üniversitesi/Veteriner Fakültesi/Su Ürünleri Hastalıkları Anabilim Dalı | |
dc.contributor.orcid | 0000-0001-9096-875X | |
dc.contributor.orcid | 0000-0001-7707-2705 | |
dc.contributor.researcherid | AAG-8518-2021 | |
dc.contributor.researcherid | T-1697-2019 | |
dc.date.accessioned | 2024-06-13T06:02:01Z | |
dc.date.available | 2024-06-13T06:02:01Z | |
dc.date.issued | 2021-02 | |
dc.description.abstract | During a study on culturable microorganisms from fish farms, four yellow-pigmented gram negative, rod shaped isolates, F-47(T), F-339(T), F-380 and F-400, were recovered from rainbow trout samples exhibiting clinical signs. Based on 16S rRNA gene sequence analysis, the strains were identified as members of the genus Flavobacterium. Strains F-47(T) and F-380 shared the highest 16S rRNA gene sequence identity level of 97.6% with the type strain of Flavobacterium frigoris DSM 15719(T) while strains F-339(T) and F-400 shared the highest identity level of 97.6% with the type strain of F. caseinilyticum AT-3-2(T). A polyphasic taxonomic approach including phenotypic and genomic characterization as well as whole-cell MALDI-TOF mass spectrometry analyses was employed to ascertain the taxonomic position of the strains within the genus Flavobacterium. Digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) analyses between strains F-47(T), F-339(T) and their close neighbours F. frigoris DSM 15719(T) and F. caseinilyticum AT-3-2(T), respectively, confirmed that both strains represent novel species in the genus Flavobacterium. The DNA G+C contents of the strains F-47(T) and F-339(T) are 34.3% and 35.3%, respectively. It can be concluded on the basis of polyphasic characterization as well as pairwise genome comparisons that the strains F-47(T) and F-339(T) represent two novel species within the genus Flavobacterium, for which Flavobacterium kayseriense sp. nov. F-47(T) (=JCM 34195(T)=KCTC 82255(T)) and Flavobacterium turcicum sp. nov. F-339(T) (=JCM 34202(T)=KCTC 82262(T)) are proposed, respectively. | |
dc.description.sponsorship | Research Fund of Erciyes University, Turkey (TSA-2020-9733) | |
dc.identifier.doi | 10.1016/j.syapm.2021.126186 | |
dc.identifier.issn | 0723-2020 | |
dc.identifier.issn | 1618-0984 | |
dc.identifier.issue | 2 | |
dc.identifier.pubmed | 33647765 | |
dc.identifier.uri | https://doi.org/10.1016/j.syapm.2021.126186 | |
dc.identifier.uri | https://www.sciencedirect.com/science/article/pii/S0723202021000096 | |
dc.identifier.uri | https://hdl.handle.net/11452/42105 | |
dc.identifier.volume | 44 | |
dc.identifier.wos | 000740924400005 | |
dc.indexed.pubmed | PubMed | |
dc.indexed.wos | WOS.SCI | |
dc.language.iso | en | |
dc.publisher | Elsevier | |
dc.relation.journal | Systematic and Applied Microbiology | |
dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi | |
dc.rights | info:eu-repo/semantics/closedAccess | |
dc.subject | Proposed minimal standards | |
dc.subject | Emended description | |
dc.subject | Genus flavobacterium | |
dc.subject | Phylogenetic trees | |
dc.subject | Diversity | |
dc.subject | Sequences | |
dc.subject | Database | |
dc.subject | Family | |
dc.subject | Water | |
dc.subject | Flavobacterium | |
dc.subject | Rainbow trout | |
dc.subject | Oncorhynchus mykiss | |
dc.subject | Aquaculture | |
dc.subject | Science & technology | |
dc.subject | Life sciences & biomedicine | |
dc.subject | Microbiology | |
dc.subject | Biotechnology & applied microbiology | |
dc.title | Flavobacterium turcicum sp. nov. and Flavobacterium kayseriense sp. nov. isolated from farmed rainbow trout in Turkey | |
dc.type | Article | |
dspace.entity.type | Publication | |
relation.isAuthorOfPublication | 587c39ff-99c9-4b57-9514-4a94d8b8a38a | |
relation.isAuthorOfPublication | 498506bf-cb51-45f4-bef0-287c91cd76bd | |
relation.isAuthorOfPublication.latestForDiscovery | 587c39ff-99c9-4b57-9514-4a94d8b8a38a |