Publication:
Shewanella oncorhynchi sp. nov., a novel member of the genus shewanella, isolated from rainbow trout (oncorhynchus mykiss)

dc.contributor.authorAy, Hilal
dc.contributor.buuauthorALTUN, SONER
dc.contributor.buuauthorDuman, Muhammed
dc.contributor.buuauthorDUMAN, MUHAMMED
dc.contributor.buuauthorSatıcıoğlu, İzzet Burçin
dc.contributor.buuauthorSATICIOĞLU, İZZET BURÇİN
dc.contributor.departmentBursa Uludağ Üniversitesi/Veteriner Fakültesi.
dc.contributor.departmentBursa Uludağ Üniversitesi/Keleş Meslek Yüksekokulu.
dc.contributor.orcid0000-0001-7707-2705
dc.contributor.orcid0000-0002-2721-3204
dc.contributor.researcheridT-1697-2019
dc.contributor.researcheridAAG-8518-2021
dc.contributor.researcheridAAD-4156-2019
dc.date.accessioned2024-10-18T05:41:44Z
dc.date.available2024-10-18T05:41:44Z
dc.date.issued2022-01-01
dc.description.abstractA strain, S-1(T) was isolated from rainbow trout (Oncorhynchus mykiss) exhibiting clinical symptoms of lens atrophy, inappetence, visual impairment and growth retardation. The strain was identified as representing a member of the genus Shewanella on the basis of the results of 16S rRNA gene sequence analysis. The neighbor-joining phylogenetic tree based on 16S rRNA gene sequences indicated that S-1(T) clustered with Shewanella putrefaciens JCM 20190(T), Shewanella profunda DSM 15900(T), and Shewanella hafniensis P010(T), sharing 99.3, 98.8 and 87.7% 16S rRNA gene similarities, respectively. A polyphasic taxonomic approach including phenotypic, chemotaxonomic, and genomic characterization was employed to ascertain the taxonomic position of S-1(T) within the genus Shewanella. The overall genome relatedness indices (OGRI) for S-1(T) compared with the most closely related type strains S. hafniensis ATCC BAA-1207(T), Shewanella baltica NCTC 10735(T), S. putrefaciens ATCC 8071(T) and S. profunda DSM 15900(T) were calculated as 40.8, 40.1, 28.5 and 27.3% for digital DNA-DNA hybridization (dDDH), and 91.6, 91.0, 86.3 and 85.1% for average nucleotide identity (ANI), respectively. OGRI values between S-1(T) and its close neighbours confirmed that the strain represents a novel species in the genus Shewanella. The DNA G+C content of the strain is 45.2%. Major fatty acids were C-17:1.8 omega 8c, C(15:0)iso, and summed feature 3 (C-16:1 omega 6c and/or C-16:1 omega 7c). The predominant polar lipids were phosphatidylethanolamine, phospholipid, amino-phospholipid and unidentified lipids. The major respiratory quinones were ubiquinone-8, ubiquinone-7 and menaquinone-7. Chemotaxonomic and phylogenomic analyses of this isolate confirmed that the strain represents a novel species for which the name Shewanella oncorhynchi sp. nov. is proposed, with S-1(T) as the type strain (JCM 34183(T)= KCTC 82249(T)).
dc.description.sponsorshipErciyes University TOA 2021-10904
dc.identifier.doi10.1099/ijsem.0.005460
dc.identifier.issn1466-5026
dc.identifier.issue7
dc.identifier.urihttps://doi.org/10.1099/ijsem.0.005460
dc.identifier.urihttps://hdl.handle.net/11452/46699
dc.identifier.volume72
dc.identifier.wos000837876000006
dc.indexed.wosWOS.SCI
dc.language.isoen
dc.publisherMicrobiology Soc
dc.relation.journalInternational Journal Of Systematic And Evolutionary Microbiology
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectPutrefaciens
dc.subjectSequences
dc.subjectFish
dc.subjectAquaculture
dc.subjectNovel species
dc.subjectShewanella
dc.subjectRainbow trout
dc.subjectOverall genome-related index
dc.subjectScience & technology
dc.subjectLife sciences & biomedicine
dc.subjectMicrobiology
dc.titleShewanella oncorhynchi sp. nov., a novel member of the genus shewanella, isolated from rainbow trout (oncorhynchus mykiss)
dc.typeArticle
dspace.entity.typePublication
relation.isAuthorOfPublication587c39ff-99c9-4b57-9514-4a94d8b8a38a
relation.isAuthorOfPublication498506bf-cb51-45f4-bef0-287c91cd76bd
relation.isAuthorOfPublication039c73a6-fd48-4fbe-bd26-0fe99b40120f
relation.isAuthorOfPublication.latestForDiscovery587c39ff-99c9-4b57-9514-4a94d8b8a38a

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