Publication: Shewanella oncorhynchi sp. nov., a novel member of the genus shewanella, isolated from rainbow trout (oncorhynchus mykiss)
dc.contributor.author | Ay, Hilal | |
dc.contributor.buuauthor | ALTUN, SONER | |
dc.contributor.buuauthor | Duman, Muhammed | |
dc.contributor.buuauthor | DUMAN, MUHAMMED | |
dc.contributor.buuauthor | Satıcıoğlu, İzzet Burçin | |
dc.contributor.buuauthor | SATICIOĞLU, İZZET BURÇİN | |
dc.contributor.department | Bursa Uludağ Üniversitesi/Veteriner Fakültesi. | |
dc.contributor.department | Bursa Uludağ Üniversitesi/Keleş Meslek Yüksekokulu. | |
dc.contributor.orcid | 0000-0001-7707-2705 | |
dc.contributor.orcid | 0000-0002-2721-3204 | |
dc.contributor.researcherid | T-1697-2019 | |
dc.contributor.researcherid | AAG-8518-2021 | |
dc.contributor.researcherid | AAD-4156-2019 | |
dc.date.accessioned | 2024-10-18T05:41:44Z | |
dc.date.available | 2024-10-18T05:41:44Z | |
dc.date.issued | 2022-01-01 | |
dc.description.abstract | A strain, S-1(T) was isolated from rainbow trout (Oncorhynchus mykiss) exhibiting clinical symptoms of lens atrophy, inappetence, visual impairment and growth retardation. The strain was identified as representing a member of the genus Shewanella on the basis of the results of 16S rRNA gene sequence analysis. The neighbor-joining phylogenetic tree based on 16S rRNA gene sequences indicated that S-1(T) clustered with Shewanella putrefaciens JCM 20190(T), Shewanella profunda DSM 15900(T), and Shewanella hafniensis P010(T), sharing 99.3, 98.8 and 87.7% 16S rRNA gene similarities, respectively. A polyphasic taxonomic approach including phenotypic, chemotaxonomic, and genomic characterization was employed to ascertain the taxonomic position of S-1(T) within the genus Shewanella. The overall genome relatedness indices (OGRI) for S-1(T) compared with the most closely related type strains S. hafniensis ATCC BAA-1207(T), Shewanella baltica NCTC 10735(T), S. putrefaciens ATCC 8071(T) and S. profunda DSM 15900(T) were calculated as 40.8, 40.1, 28.5 and 27.3% for digital DNA-DNA hybridization (dDDH), and 91.6, 91.0, 86.3 and 85.1% for average nucleotide identity (ANI), respectively. OGRI values between S-1(T) and its close neighbours confirmed that the strain represents a novel species in the genus Shewanella. The DNA G+C content of the strain is 45.2%. Major fatty acids were C-17:1.8 omega 8c, C(15:0)iso, and summed feature 3 (C-16:1 omega 6c and/or C-16:1 omega 7c). The predominant polar lipids were phosphatidylethanolamine, phospholipid, amino-phospholipid and unidentified lipids. The major respiratory quinones were ubiquinone-8, ubiquinone-7 and menaquinone-7. Chemotaxonomic and phylogenomic analyses of this isolate confirmed that the strain represents a novel species for which the name Shewanella oncorhynchi sp. nov. is proposed, with S-1(T) as the type strain (JCM 34183(T)= KCTC 82249(T)). | |
dc.description.sponsorship | Erciyes University TOA 2021-10904 | |
dc.identifier.doi | 10.1099/ijsem.0.005460 | |
dc.identifier.issn | 1466-5026 | |
dc.identifier.issue | 7 | |
dc.identifier.uri | https://doi.org/10.1099/ijsem.0.005460 | |
dc.identifier.uri | https://hdl.handle.net/11452/46699 | |
dc.identifier.volume | 72 | |
dc.identifier.wos | 000837876000006 | |
dc.indexed.wos | WOS.SCI | |
dc.language.iso | en | |
dc.publisher | Microbiology Soc | |
dc.relation.journal | International Journal Of Systematic And Evolutionary Microbiology | |
dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi | |
dc.rights | info:eu-repo/semantics/closedAccess | |
dc.subject | Putrefaciens | |
dc.subject | Sequences | |
dc.subject | Fish | |
dc.subject | Aquaculture | |
dc.subject | Novel species | |
dc.subject | Shewanella | |
dc.subject | Rainbow trout | |
dc.subject | Overall genome-related index | |
dc.subject | Science & technology | |
dc.subject | Life sciences & biomedicine | |
dc.subject | Microbiology | |
dc.title | Shewanella oncorhynchi sp. nov., a novel member of the genus shewanella, isolated from rainbow trout (oncorhynchus mykiss) | |
dc.type | Article | |
dspace.entity.type | Publication | |
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relation.isAuthorOfPublication | 498506bf-cb51-45f4-bef0-287c91cd76bd | |
relation.isAuthorOfPublication | 039c73a6-fd48-4fbe-bd26-0fe99b40120f | |
relation.isAuthorOfPublication.latestForDiscovery | 587c39ff-99c9-4b57-9514-4a94d8b8a38a |