Publication:
Characterization of bovine rotavirus isolates from diarrheic calves in Turkiye

dc.contributor.authorAteş, Özer
dc.contributor.authorYeşilbağ, Kadir
dc.contributor.buuauthorAteş, Özer
dc.contributor.buuauthorYEŞİLBAĞ, KADİR
dc.contributor.departmentVeteriner Fakültesi
dc.contributor.departmentViroloji Ana Bilim Dalı
dc.contributor.orcid0000-0001-7676-9033
dc.contributor.researcheridAAH-3493-2021
dc.contributor.researcheridGJX-0664-2022
dc.date.accessioned2024-10-08T10:26:19Z
dc.date.available2024-10-08T10:26:19Z
dc.date.issued2023-01-23
dc.description.abstractBackgroundNeonatal calf diarrhea, which is the most common cause in calf deaths, leads to significant economic losses in dairy farming around the world. Diarrhea develops due to infectious and non-infectious reasons. Group A Rotaviruses (RVA) are the leading and predisposing factor for acute neonatal gastroenteritis.Methods and resultsIn this study, 20 diarrheic fecal samples were collected from one farm in Balikesir province of Turkey. During virus isolation, a total of 2 stool samples were detected to produce cytopathogenic effects in MA-104 cell line. The two samples (RV-36, RV-38) were tested positive with antigen ELISA kits detecting RVA antigens. In order to detect the presence of rotavirus viral nucleic acid in cell supernatants, VP6 gene region-specific RT-PCR test was performed and the samples RV-36 and RV-38 were positive for RVA viral nucleic acid. By RT-PCR using genotype specific primers, both the isolates RV-36 and RV-38 formed amplicons compatible with G10 and P[11] genotypes of RVA. RVA nucleic acids segments were also visualized by poliacrilamide gel electrophoresis (PAGE) method. The phylogenetic tree constructed according to the VP6 gene region showed that these isolates were in the Rotavirus A group and in the I2 cluster same as other bovine and some human RVA isolates.ConclusionSuccesful isolation of RVA G10P[11] was echieved in the cattle farm. As rotaviruses play the most important role in the etiology of diarrhea in newborn calves respected genotype G10P[11] should be considered in selection of the vaccines applied to the dams. Those isolates can be further evaluated as vaccine candidate.
dc.identifier.doi10.1007/s11033-022-08169-4
dc.identifier.eissn1573-4978
dc.identifier.endpage3071
dc.identifier.issn0301-4851
dc.identifier.issue4
dc.identifier.startpage3063
dc.identifier.urihttps://doi.org/10.1007/s11033-022-08169-4
dc.identifier.urihttps://link.springer.com/article/10.1007/s11033-022-08169-4
dc.identifier.urihttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870195/
dc.identifier.urihttps://hdl.handle.net/11452/46055
dc.identifier.volume50
dc.identifier.wos000922746700004
dc.indexed.wosWOS.SCI
dc.language.isoen
dc.publisherSpringer
dc.relation.journalMolecular Biology Reports
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi
dc.relation.tubitak118 G 012
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectMolecular characterization
dc.subjectCell-culture
dc.subjectStrains
dc.subjectHemagglutination
dc.subjectClassification
dc.subjectGenotypes
dc.subjectG6
dc.subjectCattle
dc.subjectBovine rotavirus
dc.subjectVirus isolation
dc.subjectRt-pcr
dc.subjectGenotyping page
dc.subjectScience & technology
dc.subjectLife sciences & biomedicine
dc.subjectBiochemistry & molecular biology
dc.titleCharacterization of bovine rotavirus isolates from diarrheic calves in Turkiye
dc.typeArticle
dspace.entity.typePublication
local.contributor.departmentVeteriner Fakültesi/Viroloji Ana Bilim Dalı
relation.isAuthorOfPublicationb5374809-7a56-4b86-973f-11b3cce21a21
relation.isAuthorOfPublication.latestForDiscoveryb5374809-7a56-4b86-973f-11b3cce21a21

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