Differentially expressed genes in leaf, meristematic and flower tissues of garlic

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dc.contributor.authorSenalik, Douglas A.
dc.contributor.authorSimon, Philipp W.
dc.contributor.authorWako, T.
dc.contributor.buuauthorİpek, Meryem S.
dc.contributor.buuauthorİpek, Ahmet
dc.contributor.buuauthorAydoğan, Çiğdem
dc.contributor.departmentUludağ Üniversitesi/Ziraat Fakültesi/Bahçe Bitkileri Bölümü.tr_TR
dc.contributor.orcid0000-0003-4884-5304tr_TR
dc.contributor.researcheridAAH-3233-2021tr_TR
dc.contributor.researcheridAAG-6532-2020tr_TR
dc.contributor.scopusid16031208900tr_TR
dc.contributor.scopusid6603912487tr_TR
dc.contributor.scopusid55481474200tr_TR
dc.date.accessioned2022-01-21T07:19:20Z
dc.date.available2022-01-21T07:19:20Z
dc.date.issued2012
dc.descriptionBu çalışma, 21-24 Mayıs 2012 tarihleri arasında Fukuoka[Japonyo]’da düzenlenen 6. International Symposium on Edible Alliaceae’da bildiri olarak sunulmuştur.tr_TR
dc.description.abstractDifferential gene expression analysis has been investigated to reveal important genes in many plant species. Identification of genes controlling metabolic pathways in garlic could contribute to the understanding of garlic genetic. In this study, transcript (mRNA) profile of differentially expressed genes was determined in leaf, meristematic and flower tissues of three genetically divers garlic clones at different developmental stages using cDNA-AFLP approach. In total, 352 differentially expressed transcript-derived fragments (TDFs) were evaluated from 20 primer combinations. While seven TDFs fragments expressed only in meristematic tissues, 30 TDFs expressed only in leaf tissues. Twenty seven fragments expressed in both meristematic and leaf tissues with intensity polymorphism and two fragments differentially expressed in flower tissues. BLAST analysis of these tissue specific expressed fragments revealed that some genes have significant similarities with previously determined sequences in the database of NCBI GenBank while some of them are unique to garlic genome. These tissue specific expressed genes can be used to develop tissue specific markers for garlic genome.en_US
dc.description.sponsorshipInt Soc Hort Sci (ISHS)en_US
dc.identifier.citationİpek, M. vd. (2012). "Differentially expressed genes in leaf, meristematic and flower tissues of garlic". ed. T. Wako. Acta Horticulturae-VI International Symposium on Edible Alliaceae, Acta Horticulturae. 969, 53-57.en_US
dc.identifier.endpage57tr_TR
dc.identifier.isbn978-90-66056-95-4
dc.identifier.issn0567-7572
dc.identifier.scopus2-s2.0-84872050813tr_TR
dc.identifier.startpage53tr_TR
dc.identifier.urihttps://doi.org/10.17660/ActaHortic.2012.969.3
dc.identifier.urihttp://hdl.handle.net/11452/24205
dc.identifier.volume969tr_TR
dc.identifier.wos000324531800003tr_TR
dc.indexed.scopusScopusen_US
dc.indexed.wosCPCISen_US
dc.language.isoenen_US
dc.publisherInt Soc Horticultural Scienceen_US
dc.relation.collaborationYurt dışıtr_TR
dc.relation.journalActa Horticulturae-VI International Symposium on Edible Alliaceae, Acta Horticulturaeen_US
dc.relation.publicationcategoryKonferans Öğesi - Uluslararasıtr_TR
dc.relation.tubitak105O551tr_TR
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectAgricultureen_US
dc.subjectPlant sciencesen_US
dc.subjectAllium sativumen_US
dc.subjectDifferential gene expression analysisen_US
dc.subjectcDNA-aflpen_US
dc.subjectTranscript-derived fragmentsen_US
dc.subjectAflp markersen_US
dc.subjectDiversityen_US
dc.subject.scopusGarlic; Allium Roseum; Boltingen_US
dc.subject.wosAgronomyen_US
dc.subject.wosPlant sciencesen_US
dc.subject.wosHorticultureen_US
dc.titleDifferentially expressed genes in leaf, meristematic and flower tissues of garlicen_US
dc.typeProceedings Paper

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