Genetic diversity of the 3' and 5' untranslated regions of the HSP70.1 gene between native Turkish and Holstein Friesian cattle breeds

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dc.contributor.authorSoysal, Deniz
dc.contributor.authorKarakas, V.
dc.contributor.buuauthorÖner, Yasemin
dc.contributor.buuauthorKeskin, Abdülkadir
dc.contributor.buuauthorÜstüner, Hakan
dc.contributor.departmentUludağ Üniversitesi/Ziraat Fakültesi/Zootekni, Biyometri ve Genetik Bölümü.tr_TR
dc.contributor.departmentUludağ Üniversitesi/Veteriner Fakültesi.tr_TR
dc.contributor.departmentUludağ Üniversitesi/Veteriner Fakültesi/Zootekni Anabilim Dalı.tr_TR
dc.contributor.orcid0000-0002-2904-8986tr_TR
dc.contributor.orcid0000-0002-4341-5842tr_TR
dc.contributor.researcheridAAH-3831-2021tr_TR
dc.contributor.researcheridAAG-9127-2021tr_TR
dc.contributor.researcheridABB-3181-2020tr_TR
dc.contributor.scopusid9634793800tr_TR
dc.contributor.scopusid24473229800tr_TR
dc.contributor.scopusid16065222700tr_TR
dc.date.accessioned2023-01-16T12:21:55Z
dc.date.available2023-01-16T12:21:55Z
dc.date.issued2017
dc.description.abstractHeat stress proteins are important factors in protecting cells against environmental stress. The HSP70.1 gene is one of the most important members of the heat stress protein family, which is essential for life, production and reproduction. In this study, partial regions of HSP70.1 (3' and 5' untranslated regions (UTRs)) were sequenced in six cattle breeds. Blood samples of five native breeds, namely Yerli Kara (YK), Boz irk (BI), Yerli Guney Sarisi (YGS), Guney Dogu Anadolu Kirmizisi (GAK) and Dogu Anadolu Kirmizisi (DAK) were collected from their native regions and blood samples of the Holstein Friesian (Siyah Alaca (SA)) breed were collected from each of these regions. Totals of 249 and 206 animals were analysed for the HSP70.1-3' and 5' UTR regions, respectively. In the 3' UTR region, 13 single nucleotide polymorphisms (SNPs) and one indel were found, whereas this region was found to be monomorphic among animals of the Holstein Friesian breed. In the 5' UTR region, 43 SNPs and three indels were revealed in all of the investigated breeds. On the other hand, a new C983T nucleotide substitution was identified in this region, and is thought to disrupt the Sp1-hsp70 promoter binding site. The 5' UTR region was also more variable in the Turkish native breeds than in the Holstein Friesian. This study is the first to investigate the 3' and 5' UTRs of the HSP70.1 gene in Turkish native breeds. The genetic structure of these gene regions in Turkish native cattle breeds was found to be quite different from those of other cattle breeds that had been studied in the past.en_US
dc.identifier.citationÖner, Y. vd. (2017). ''Genetic diversity of the 3' and 5' untranslated regions of the HSP70.1 gene between native Turkish and Holstein Friesian cattle breeds''. South African Journal of Animal Sciences, 47(4), 424-439.en_US
dc.identifier.endpage439tr_TR
dc.identifier.issn0375-1589
dc.identifier.issue4tr_TR
dc.identifier.scopus2-s2.0-85021883463tr_TR
dc.identifier.startpage424tr_TR
dc.identifier.urihttps://doi.org/10.4314/sajas.v47i2
dc.identifier.urihttps://dx.doi.org/10.4314%2Fsajas.v47i2
dc.identifier.urihttp://hdl.handle.net/11452/30480
dc.identifier.volume47tr_TR
dc.identifier.wos000410295100002tr_TR
dc.indexed.scopusScopusen_US
dc.indexed.wosSCIEen_US
dc.language.isoenen_US
dc.publisherSouth African Journal of Animal Sciencesen_US
dc.relation.collaborationYurt dışıtr_TR
dc.relation.collaborationSanayitr_TR
dc.relation.journalSouth African Journal of Animal Sciencesen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergitr_TR
dc.relation.tubitakTOVAG 115 0 916tr_TR
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectAgricultureen_US
dc.subjectBovineen_US
dc.subjectHeat shock genesen_US
dc.subjectHeat stressen_US
dc.subjectPolymorphismen_US
dc.subjectHeat-stressen_US
dc.subjectBos-indicusen_US
dc.subjectPolymorphismsen_US
dc.subjectPromoteren_US
dc.subjectEmbryosen_US
dc.subjectMouseen_US
dc.subjectActivationen_US
dc.subjectTraitsen_US
dc.subject3'-Utren_US
dc.subjectTaurusen_US
dc.subject.scopusDairy Cows; Holstein-Friesian Cattle; Cattleen_US
dc.subject.wosAgriculture, dairy & animal scienceen_US
dc.titleGenetic diversity of the 3' and 5' untranslated regions of the HSP70.1 gene between native Turkish and Holstein Friesian cattle breedsen_US
dc.typeArticle
dc.wos.quartileQ2en_US

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